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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_30938255_30939469_F

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
30938255 - 30939469
Intron Length:
1215

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTAGCCCTC
5'SS Class:
weak_major
3'SS Sequence:
TCTGTGCTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAA
U12 Branch Point Sequence:
CTCTCCTAATCT
Flanking Amino Acid:
SGSLTSCRSSRRFEALERMG
Intron Amino Acid Position:
66

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
56.2
0.15
1.3
49.3
47.4
Major BPS
85.7
0.89
0.8
85.9
22.5
Major PPT
80.6
0.69
0.9
76.9
37.3
Minor 5ss
47.1
-0.3
3.2
68.2
43
Minor BPS
56.5
0.28
2
75.16
47.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012255
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030157
30938058 - 30952031
13974