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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_30939616_30939934_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
30939616 - 30939934
Intron Length:
319

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAACCCAC
5'SS Class:
major
3'SS Sequence:
ATTCCATTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTAAAT
U12 Branch Point Sequence:
CTTCTCTAAATT
Flanking Amino Acid:
FLAPASLLLPEAVKEAQEVT
Intron Amino Acid Position:
180

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.3
0.57
1.2
63.2
43.4
Major BPS
69.8
0.49
1.1
75.5
35.2
Major PPT
81.5
0.71
0.8
78
34.6
Minor 5ss
43.7
-0.7
2.9
59.1
45.6
Minor BPS
60.3
0.4
1.7
76.4
40.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012255
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032253
30938766 - 30952031
13266
ENSAPLT00000030157
30938058 - 30952031
13974
ENSAPLT00000012774
30938766 - 30945620
6855