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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_30942128_30942428_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
30942128 - 30942428
Intron Length:
301

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTAAGTGGC
5'SS Class:
strong_major
3'SS Sequence:
TTTGTTGCCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTGAA
U12 Branch Point Sequence:
CATATCTGAATA
Flanking Amino Acid:
QFDQEIEMMAKCQHENLVEL
Intron Amino Acid Position:
321

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.1
0.8
0.9
73.6
37.1
Major BPS
73.3
0.58
0.9
63.4
35.6
Major PPT
78
0.63
0.9
72.5
37.8
Minor 5ss
34.7
-1.7
3.2
43.8
38
Minor BPS
55
0.15
1.5
61.77
38.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012255
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030157
30938058 - 30952031
13974
ENSAPLT00000012774
30938766 - 30945620
6855
ENSAPLT00000032253
30938766 - 30952031
13266