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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_3094223_3095369_F

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3094223 - 3095369
Intron Length:
1147

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTTAGTTGA
5'SS Class:
major
3'SS Sequence:
TGTCTCTCTACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTCCAT
U12 Branch Point Sequence:
TGTCTCTCTACA
Flanking Amino Acid:
QEVPTQLPGQPLLGKACLCC
Intron Amino Acid Position:
566

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73
0.54
1.2
69.9
37.2
Major BPS
77.3
0.68
1.2
86.7
32.3
Major PPT
82.9
0.74
0.8
76.7
32.1
Minor 5ss
37.6
-1.4
2.7
42.4
38.4
Minor BPS
49.7
-0
1.9
65.87
39.8

Associated Gene:

Gene:
PFKFB3
Ensembl Gene ID:
ENSAPLG00000004459
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041007
3062201 - 3099157
36957
ENSAPLT00000019373
3083188 - 3099157
15970
ENSAPLT00000004648
3062201 - 3096557
34357