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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_30942544_30944597_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
30942544 - 30944597
Intron Length:
2054

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
CTTCTTATTCAAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
ATGTTTTCACTT
Flanking Amino Acid:
GSLLDRLACLNDTPPISWDT
Intron Amino Acid Position:
360

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90
0.94
0.8
85
26.1
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
73.7
0.53
1
72
37
Minor 5ss
35.2
-1.7
2.7
39.2
40.5
Minor BPS
48.1
-0
1.7
65.34
40.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012255
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032253
30938766 - 30952031
13266
ENSAPLT00000030157
30938058 - 30952031
13974
ENSAPLT00000012774
30938766 - 30945620
6855