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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_30944708_30945553_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
30944708 - 30945553
Intron Length:
846

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAAGCT
5'SS Class:
strong_major
3'SS Sequence:
TTCCCTGCTTAAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTCAT
U12 Branch Point Sequence:
TGACAATTCATG
Flanking Amino Acid:
ENNHIHRDIKSFWTSVMPGR
Intron Amino Acid Position:
396

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.1
0.76
0.9
74.9
33.2
Major BPS
83.4
0.83
0.8
83.7
25.7
Major PPT
67.8
0.4
1
71.3
33.4
Minor 5ss
32.4
-2
3.5
48.3
47.4
Minor BPS
40.5
-0.8
2.1
45.08
40.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012255
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012774
30938766 - 30945620
6855