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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_30947190_30948054_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
30947190 - 30948054
Intron Length:
865

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTA|GTAAGTAGA
5'SS Class:
major
3'SS Sequence:
TTTTTTCTCTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TGATTTTTATTT
Flanking Amino Acid:
PKSDIFSFGVVLLEIITGLP
Intron Amino Acid Position:
393

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.3
0.67
1
73.5
37.2
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
88.7
0.87
0.6
89.2
19.8
Minor 5ss
37
-1.5
2.7
44
38.5
Minor BPS
58.8
0.35
1.5
72.71
38.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012255
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032253
30938766 - 30952031
13266
ENSAPLT00000030157
30938058 - 30952031
13974