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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_30948118_30951087_F

Intron Information:

Intron Rank:
9
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
30948118 - 30951087
Intron Length:
2970

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTATTTTTC
5'SS Class:
weak_major
3'SS Sequence:
AACTCTCTTGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTCAT
U12 Branch Point Sequence:
ATTGCTTCAAAC
Flanking Amino Acid:
VDENREPQLLLGIKDEIEDE
Intron Amino Acid Position:
414

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.5
0.51
1
69.5
35.6
Major BPS
84.8
0.86
1
85.7
34.9
Major PPT
76.7
0.6
0.9
69.8
35.6
Minor 5ss
53.8
0.13
2.3
67
39.2
Minor BPS
53.7
0.09
1.7
66.24
39.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012255
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032253
30938766 - 30952031
13266
ENSAPLT00000030157
30938058 - 30952031
13974