About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_30951247_30951335_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
30951247 - 30951335
Intron Length:
89

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTATGTAGC
5'SS Class:
major
3'SS Sequence:
TGTTCTTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTGTAC
U12 Branch Point Sequence:
TTATTTGTACTT
Flanking Amino Acid:
KKNRRPNSKTVQQHLQEIKA
Intron Amino Acid Position:
467

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.4
0.67
1
69.2
41.7
Major BPS
61.6
0.29
1.4
63.4
44
Major PPT
89.2
0.88
0.7
84.5
30.4
Minor 5ss
42.7
-0.8
2.5
54.7
42.7
Minor BPS
47.7
-0
2.2
71.31
40.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012255
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032253
30938766 - 30952031
13266
ENSAPLT00000030157
30938058 - 30952031
13974