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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_3095393_3095648_F

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
3095393 - 3095648
Intron Length:
256

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCT|GTAAGTATC
5'SS Class:
major
3'SS Sequence:
TTATCACTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATCAC
U12 Branch Point Sequence:
ACATAGTGAATT
Flanking Amino Acid:
PGQPLLGKACLCCLNSCLLP
Intron Amino Acid Position:
573

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.3
0.64
1.1
78.6
35.6
Major BPS
78.3
0.7
1
80
32.1
Major PPT
80.7
0.69
0.9
74.5
35
Minor 5ss
43.2
-0.7
2.9
64.8
39.3
Minor BPS
44.4
-0.3
2.2
61.1
42.6

Associated Gene:

Gene:
PFKFB3
Ensembl Gene ID:
ENSAPLG00000004459
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004648
3062201 - 3096557
34357