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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_3095393_3098150_F

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
3095393 - 3098150
Intron Length:
2758

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCT|GTAAGTATC
5'SS Class:
major
3'SS Sequence:
CCTCTCGTTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ACCCCAA
U12 Branch Point Sequence:
GTCACCCCAACC
Flanking Amino Acid:
PGQPLLGKACLT*
Intron Amino Acid Position:
514

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.3
0.64
1.1
78.6
35.6
Major BPS
46.7
-0.2
1.2
52.4
34
Major PPT
78.3
0.64
0.8
72
32.5
Minor 5ss
43.2
-0.7
2.9
64.8
39.3
Minor BPS
48.4
-0.1
1.9
61.43
43.2

Associated Gene:

Gene:
PFKFB3
Ensembl Gene ID:
ENSAPLG00000004459
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019373
3083188 - 3099157
15970