Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_30957803_30959479_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

30957803 - 30959479

Intron Length:

1677

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAAGTACA

5'SS Class:

strong_major

3'SS Sequence:

TTTTTTCTTCCAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

ATATTAT

U12 Branch Point Sequence:

AATATTATAAGC

Flanking Amino Acid:

RQLWMPIIRKIEIDNGDELT

Intron Amino Acid Position:

342

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

97.1

1.11

0.7

89.8

22.5

Major BPS

75.9

0.64

66.1

40.5

Major PPT

95.5

1.02

0.5

88.9

28.1

Minor 5ss

-1.6

2.6

43.5

43.6

Minor BPS

45.6

-0.3

1.8

55.11

36.7

Associated Gene:

Gene:

TWF1

Ensembl Gene ID:

ENSAPLG00000011689

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000012200

30957632 - 30970251

12620