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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_30960152_30960329_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
30960152 - 30960329
Intron Length:
178

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
CTG|GCAAGTATA
5'SS Class:
strong_major
3'SS Sequence:
CTTTTGTTAACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTAAC
U12 Branch Point Sequence:
CTTTTGTTAACA
Flanking Amino Acid:
KNKQLNYVQLQIDMKNETIV
Intron Amino Acid Position:
251

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.4
0.86
1
85.5
30.7
Major BPS
81.9
0.79
0.8
81.9
25
Major PPT
80.7
0.69
0.9
76.7
36.2
Minor 5ss
29.1
-2.4
3.8
39.2
40.5
Minor BPS
65.4
0.48
2.1
78.35
38.8

Associated Gene:

Gene:
TWF1
Ensembl Gene ID:
ENSAPLG00000011689
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012200
30957632 - 30970251
12620