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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_30960456_30964364_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
30960456 - 30964364
Intron Length:
3909

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTACCTACA
5'SS Class:
major
3'SS Sequence:
ACTTGTGTTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTACAT
U12 Branch Point Sequence:
TTTCAGTTGACT
Flanking Amino Acid:
EELRQIKINEVQTDVGVDTK
Intron Amino Acid Position:
209

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.8
0.56
1.2
71.8
39.9
Major BPS
70.4
0.51
1.1
78.7
33.6
Major PPT
75.1
0.57
1
65.4
45
Minor 5ss
40.5
-1.1
2.8
52.7
43.9
Minor BPS
54.2
0.21
2.3
82.07
39.1

Associated Gene:

Gene:
TWF1
Ensembl Gene ID:
ENSAPLG00000011689
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012200
30957632 - 30970251
12620