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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_30966118_30967439_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
30966118 - 30967439
Intron Length:
1322

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCT|GTAAGTAGC
5'SS Class:
major
3'SS Sequence:
TCTGATATACTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAA
U12 Branch Point Sequence:
GTTTTCTGATAT
Flanking Amino Acid:
FIAWSPDHSPVRQKMLYAAT
Intron Amino Acid Position:
142

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.6
0.58
1.1
69.5
41.3
Major BPS
81.6
0.78
0.8
82
24.9
Major PPT
63.7
0.31
1
56.4
43.1
Minor 5ss
39
-1.2
2.8
55.8
41.5
Minor BPS
52.8
0.17
1.8
74.87
41.4

Associated Gene:

Gene:
TWF1
Ensembl Gene ID:
ENSAPLG00000011689
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012200
30957632 - 30970251
12620