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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_30967619_30970007_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
30967619 - 30970007
Intron Length:
2389

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTTAGTCAA
5'SS Class:
major
3'SS Sequence:
TTATTGGTTATAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCTAAC
U12 Branch Point Sequence:
TTGTTGCTAACA
Flanking Amino Acid:
YRLLKIVIDNEQLVLGSSRR
Intron Amino Acid Position:
82

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.9
0.59
1.2
68
38.5
Major BPS
69.4
0.48
1.1
69.6
35.5
Major PPT
74.6
0.55
1
69
41.8
Minor 5ss
30
-2.3
2.6
31
36.1
Minor BPS
50
-0
2.3
71.32
41.1

Associated Gene:

Gene:
TWF1
Ensembl Gene ID:
ENSAPLG00000011689
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012200
30957632 - 30970251
12620