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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_30994250_30994689_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
30994250 - 30994689
Intron Length:
440

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTATAGCAT
5'SS Class:
major
3'SS Sequence:
TCTCTACATACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTGTAT
U12 Branch Point Sequence:
GTATCTCTACAT
Flanking Amino Acid:
LPPIKRKTQSRQRTALNYLR
Intron Amino Acid Position:
16

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.2
0.52
1
64.6
40.9
Major BPS
71.5
0.53
1.4
71.7
44.6
Major PPT
76
0.58
0.9
69.8
34.7
Minor 5ss
37.9
-1.4
3.4
55.3
48.9
Minor BPS
47.2
-0.1
2
67.73
42.6

Associated Gene:

Gene:
TMEM117
Ensembl Gene ID:
ENSAPLG00000011678
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030170
30993833 - 31203469
209637