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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_31017285_31020168_R

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
31017285 - 31020168
Intron Length:
2884

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
TAG|GCAGAAGTG
5'SS Class:
major
3'SS Sequence:
AGACGATGAACAG|C
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TATGGAA
U12 Branch Point Sequence:
TTCCCCTTCAGG
Flanking Amino Acid:
VTEVDWCVNSTCIFICNTN
Intron Amino Acid Position:
10

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.7
0.61
1.1
67.2
40.9
Major BPS
54.5
0.11
1.4
55.4
42
Major PPT
49
-0
1.1
40
42.2
Minor 5ss
21.7
-3.3
4.3
37
47.6
Minor BPS
49.5
-0.1
2.2
60.38
47.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000011685
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012157
31016300 - 31020197
3898