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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_31024877_31085482_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
31024877 - 31085482
Intron Length:
60606

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAGGTTGC
5'SS Class:
strong_major
3'SS Sequence:
CTTGTTTCCACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACAGAC
U12 Branch Point Sequence:
TTTAGCTTACAG
Flanking Amino Acid:
NLFLIMEGNMSAYIITDFMG
Intron Amino Acid Position:
329

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.1
0.83
1
73.2
39.3
Major BPS
56.4
0.16
1
52.6
34.2
Major PPT
81.1
0.7
0.8
75.9
32.8
Minor 5ss
39.2
-1.2
3.1
52.5
44.7
Minor BPS
47.7
-0.3
2.2
61.29
46.1

Associated Gene:

Gene:
TMEM117
Ensembl Gene ID:
ENSAPLG00000011678
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030170
30993833 - 31203469
209637
ENSAPLT00000026139
30992385 - 31203516
211132
ENSAPLT00000012151
30992385 - 31203516
211132