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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_31085583_31128957_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
31085583 - 31128957
Intron Length:
43375

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGAAAT
5'SS Class:
strong_major
3'SS Sequence:
GTTATCTCTGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATGTTAT
U12 Branch Point Sequence:
AGCAGTTTAACT
Flanking Amino Acid:
WMGDFVTAWMVTDMMLQDKP
Intron Amino Acid Position:
363

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86
0.85
0.9
82.5
29.7
Major BPS
72.5
0.56
1.2
63.4
44
Major PPT
76.2
0.59
0.9
70.5
36.1
Minor 5ss
35.3
-1.7
3.1
46.4
43
Minor BPS
52.9
0.17
1.8
67.53
43.3

Associated Gene:

Gene:
TMEM117
Ensembl Gene ID:
ENSAPLG00000011678
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030170
30993833 - 31203469
209637
ENSAPLT00000026139
30992385 - 31203516
211132
ENSAPLT00000012151
30992385 - 31203516
211132