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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_31161319_31193394_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
31161319 - 31193394
Intron Length:
32076

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACGCTCT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTTAACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTTAT
U12 Branch Point Sequence:
TTTTTTTTAACA
Flanking Amino Acid:
LVFDLLIVMQDWEFPHFMGD
Intron Amino Acid Position:
449

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.8
0.73
1
72.5
39.7
Major BPS
84.1
0.85
0.9
75.3
39.4
Major PPT
90.7
0.92
0.7
88.7
26.8
Minor 5ss
45.4
-0.5
3.1
65.8
45.3
Minor BPS
86.3
1.14
0.8
90.59
23.6

Associated Gene:

Gene:
TMEM117
Ensembl Gene ID:
ENSAPLG00000011678
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026139
30992385 - 31203516
211132
ENSAPLT00000012151
30992385 - 31203516
211132
ENSAPLT00000030170
30993833 - 31203469
209637