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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_31238512_31240624_R

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
31238512 - 31240624
Intron Length:
2113

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGGCTC
5'SS Class:
strong_major
3'SS Sequence:
TGTTTTTGAACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGTAAT
U12 Branch Point Sequence:
TGTTTTTGAACA
Flanking Amino Acid:
IQNCQQCRCLQGEVDCWPLP
Intron Amino Acid Position:
652

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.6
0.75
1
69.6
41.1
Major BPS
84.4
0.85
1.1
84
34.5
Major PPT
76
0.59
1
73.3
40.9
Minor 5ss
35.5
-1.7
3.4
47.8
42.4
Minor BPS
68.6
0.58
1.3
76.57
34.1

Associated Gene:

Gene:
NELL2
Ensembl Gene ID:
ENSAPLG00000011297
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011802
31235438 - 31380187
144750