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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_31250754_31271881_R

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
31250754 - 31271881
Intron Length:
21128

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGATTA
5'SS Class:
strong_major
3'SS Sequence:
TCTTTTGAACCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAA
U12 Branch Point Sequence:
TTCTTTTGAACC
Flanking Amino Acid:
QGFTGPSCETDIDECSDGFV
Intron Amino Acid Position:
481

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.4
0.84
0.9
79.6
29.4
Major BPS
87.2
0.92
0.8
77.7
37.1
Major PPT
72.2
0.5
1
66.8
43.1
Minor 5ss
41.7
-0.9
3.1
53.2
45
Minor BPS
67.1
0.52
1.4
74.34
36.6

Associated Gene:

Gene:
NELL2
Ensembl Gene ID:
ENSAPLG00000011297
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011802
31235438 - 31380187
144750