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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_31274248_31310307_R

Intron Information:

Intron Rank:
11
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
31274248 - 31310307
Intron Length:
36060

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTT|GTAAAGATG
5'SS Class:
major
3'SS Sequence:
GAAGCTTCAAAAG|T
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
CTTTCAT
U12 Branch Point Sequence:
AAAGCTTTCATT
Flanking Amino Acid:
EDNAYCEGNTFVPFLFHFSE
Intron Amino Acid Position:
399

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
62
0.28
1.1
61.5
42.6
Major BPS
87.6
0.93
0.9
89.3
26
Major PPT
48.7
-0
1.1
45.9
40.1
Minor 5ss
37.8
-1.4
3.4
54
44.5
Minor BPS
48.7
-0
1.8
63.85
41

Associated Gene:

Gene:
NELL2
Ensembl Gene ID:
ENSAPLG00000011297
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011802
31235438 - 31380187
144750