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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_31310447_31312974_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
31310447 - 31312974
Intron Length:
2528

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGATAA
5'SS Class:
strong_major
3'SS Sequence:
TGTTTCTGAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTTAA
U12 Branch Point Sequence:
TTCTTCTTAACC
Flanking Amino Acid:
LSHSCCKICKGHDFCTEGHN
Intron Amino Acid Position:
353

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.2
0.99
0.8
83
23.8
Major BPS
82.2
0.8
0.8
71.9
35.8
Major PPT
73.2
0.52
1
69.8
40.4
Minor 5ss
37.3
-1.4
3
46.9
48.4
Minor BPS
84.2
1.05
1
85.68
32.7

Associated Gene:

Gene:
NELL2
Ensembl Gene ID:
ENSAPLG00000011297
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011802
31235438 - 31380187
144750