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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_31337106_31338386_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
31337106 - 31338386
Intron Length:
1281

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTATGGCTA
5'SS Class:
major
3'SS Sequence:
TTTATTCTTCTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTTAT
U12 Branch Point Sequence:
CTAAATATAACT
Flanking Amino Acid:
TDGCKNCTCMNGTVQCEALI
Intron Amino Acid Position:
254

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74
0.57
1
64
41.6
Major BPS
84.1
0.85
0.9
75.3
39.4
Major PPT
84.9
0.79
0.7
78
36.4
Minor 5ss
40.6
-1.1
3.3
52.4
46.7
Minor BPS
48.5
-0
1.8
67.66
42.6

Associated Gene:

Gene:
NELL2
Ensembl Gene ID:
ENSAPLG00000011297
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011802
31235438 - 31380187
144750