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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_31342909_31343013_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
31342909 - 31343013
Intron Length:
105

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAA|GTAAGTAAC
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAATGAT
U12 Branch Point Sequence:
TAACTTGGGACA
Flanking Amino Acid:
SHLILHVDCNKIYERVVEKP
Intron Amino Acid Position:
169

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.2
0.88
0.9
84.2
26.3
Major BPS
68
0.45
1
57.8
39
Major PPT
100
1.12
0.4
100
0
Minor 5ss
37.7
-1.4
2.7
46.1
36.1
Minor BPS
40.7
-0.7
1.9
49.3
34.9

Associated Gene:

Gene:
NELL2
Ensembl Gene ID:
ENSAPLG00000011297
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011802
31235438 - 31380187
144750