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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_31357126_31378576_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
31357126 - 31378576
Intron Length:
21451

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACGGCCC
5'SS Class:
major
3'SS Sequence:
TATTTTCTTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
TTTTCTATATTT
Flanking Amino Acid:
HNGSKAFLFPDTSRSVKASP
Intron Amino Acid Position:
61

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.9
0.66
1.1
63.1
39.8
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
86.8
0.83
0.7
85.8
28.4
Minor 5ss
30.9
-2.2
3.4
42.7
44.4
Minor BPS
61.5
0.44
1.8
84.57
36.4

Associated Gene:

Gene:
NELL2
Ensembl Gene ID:
ENSAPLG00000011297
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011802
31235438 - 31380187
144750