About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_31421997_31422073_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
31421997 - 31422073
Intron Length:
77

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGGGTGCC
5'SS Class:
major
3'SS Sequence:
CTCCCCCCCGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTCAG
U12 Branch Point Sequence:
GCTCTCTTCAGG
Flanking Amino Acid:
SLSTALCAELENRFPARDNE
Intron Amino Acid Position:
194

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73
0.54
1
63.5
36.3
Major BPS
63.4
0.33
1.6
73.6
41.8
Major PPT
71.6
0.49
0.7
65.2
23.5
Minor 5ss
27.3
-2.6
3.2
31.8
37.6
Minor BPS
44.9
-0.5
2.1
48.56
45.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000011188
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011641
31420999 - 31425706
4708