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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_31423648_31425332_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
31423648 - 31425332
Intron Length:
1685

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGTTT
5'SS Class:
strong_major
3'SS Sequence:
GTTTCCAAAACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTCCAA
U12 Branch Point Sequence:
GTTTCCAAAACA
Flanking Amino Acid:
ETGIEKVTEKMQSMGIISNS
Intron Amino Acid Position:
290

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.9
1.01
0.8
88.6
27.1
Major BPS
68.1
0.45
1.3
78.7
34.9
Major PPT
65.4
0.35
1
60.2
39.5
Minor 5ss
42.7
-0.8
3.4
64.1
47.4
Minor BPS
61.4
0.35
2
77.37
39.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000011188
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011641
31420999 - 31425706
4708