About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_31433451_31435723_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
31433451 - 31435723
Intron Length:
2273

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGGAAT
5'SS Class:
strong_major
3'SS Sequence:
AACTTGCCAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAATAAA
U12 Branch Point Sequence:
CTCTCATTAACT
Flanking Amino Acid:
AINLGLKESQVKIWFQNRRM
Intron Amino Acid Position:
208

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.5
1
0.8
87.7
27.9
Major BPS
70.8
0.52
1
70.6
31.6
Major PPT
62.2
0.28
1
55.4
39.3
Minor 5ss
33.9
-1.8
3.3
47.8
47.9
Minor BPS
72.9
0.8
1.6
84.99
41.5

Associated Gene:

Gene:
DBX2
Ensembl Gene ID:
ENSAPLG00000011161
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011609
31433133 - 31453406
20274