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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_31435912_31440423_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
31435912 - 31440423
Intron Length:
4512

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGTTTT
5'SS Class:
strong_major
3'SS Sequence:
CTATTTCCACTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCACAT
U12 Branch Point Sequence:
TCTATTTCCACT
Flanking Amino Acid:
QHPASPTAFPREESVLPLLT
Intron Amino Acid Position:
145

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89
0.92
0.8
90.7
21.1
Major BPS
77.7
0.69
1
83.3
27.7
Major PPT
69.7
0.44
0.9
63.9
37.8
Minor 5ss
47.8
-0.2
2.8
67.5
37.3
Minor BPS
47.1
-0.1
2
67.86
43.5

Associated Gene:

Gene:
DBX2
Ensembl Gene ID:
ENSAPLG00000011161
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011609
31433133 - 31453406
20274