Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_31521388_31530176_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

5UTR

Intron Coordinates:

31521388 - 31530176

Intron Length:

8789

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TGG|GTGGGTACT

5'SS Class:

major

3'SS Sequence:

ACTTGTCTTACAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

ATAAAAT

U12 Branch Point Sequence:

TTCATGTTAACC

Flanking Amino Acid:

5UTR

Intron Amino Acid Position:

5UTR

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

74.2

0.57

1.1

71.4

40.3

Major BPS

61.8

0.29

1.1

67.7

34.6

Major PPT

0.67

0.9

72.7

Minor 5ss

31.1

-2.2

34.5

41.3

Minor BPS

56.3

0.18

2.1

70.24

41.4

Associated Gene:

Gene:

ANO6

Ensembl Gene ID:

ENSAPLG00000010899

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000030155

31521311 - 31568103

46793

ENSAPLT00000018682

31521311 - 31563381

42071