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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_31541995_31542705_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
31541995 - 31542705
Intron Length:
711

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTAGTGGA
5'SS Class:
strong_major
3'SS Sequence:
TTCTCCTCCACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CATTAAA
U12 Branch Point Sequence:
TTCTCCTCCACA
Flanking Amino Acid:
IFKLQPLDFIRKYYGEKIGI
Intron Amino Acid Position:
204

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.4
0.76
1.1
73.6
37.4
Major BPS
70.2
0.5
1
71.6
30.1
Major PPT
81.3
0.71
0.7
76.1
26
Minor 5ss
28.4
-2.5
2.9
33
41.8
Minor BPS
60.7
0.33
2
75.44
42.2

Associated Gene:

Gene:
ANO6
Ensembl Gene ID:
ENSAPLG00000010899
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032688
31530177 - 31548737
18561
ENSAPLT00000030155
31521311 - 31568103
46793
ENSAPLT00000018682
31521311 - 31563381
42071
ENSAPLT00000011390
31530177 - 31569879
39703
ENSAPLT00000034930
31530177 - 31569879
39703