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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_31542841_31545501_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
31542841 - 31545501
Intron Length:
2661

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTACTTGAT
5'SS Class:
major
3'SS Sequence:
TTTTTTTTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCTT
U12 Branch Point Sequence:
TTTTTCTTCTTT
Flanking Amino Acid:
GCLTKDNCTWRNSVYLIALE
Intron Amino Acid Position:
249

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.3
0.64
1
74.4
35.9
Major BPS
39.5
-0.6
4.3
85.7
34.9
Major PPT
98.2
1.08
0.5
92.3
26.6
Minor 5ss
33.4
-1.9
3.5
49.3
46.9
Minor BPS
46
-0.2
3.6
82.89
39.2

Associated Gene:

Gene:
ANO6
Ensembl Gene ID:
ENSAPLG00000010899
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032688
31530177 - 31548737
18561