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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_31548809_31550231_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
31548809 - 31550231
Intron Length:
1423

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGGAAT
5'SS Class:
strong_major
3'SS Sequence:
GAATCTTTTACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGAA
U12 Branch Point Sequence:
TGTTTCTGAATC
Flanking Amino Acid:
THVVMNEITQQEEHVPYTAC
Intron Amino Acid Position:
354

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.5
1
0.8
87.7
27.9
Major BPS
82.1
0.8
0.8
71.6
36.4
Major PPT
76
0.59
1
68.8
41.5
Minor 5ss
33.9
-1.8
3.3
47.8
47.9
Minor BPS
69.3
0.59
1.4
75.75
34.3

Associated Gene:

Gene:
ANO6
Ensembl Gene ID:
ENSAPLG00000010899
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030155
31521311 - 31568103
46793
ENSAPLT00000018682
31521311 - 31563381
42071
ENSAPLT00000011390
31530177 - 31569879
39703
ENSAPLT00000034930
31530177 - 31569879
39703