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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_31550310_31551817_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
31550310 - 31551817
Intron Length:
1508

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAAGTTC
5'SS Class:
major
3'SS Sequence:
ATTCTCTTGGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTAACAT
U12 Branch Point Sequence:
TATTTCTTACAT
Flanking Amino Acid:
TFCASAVFFWILLIIASVIG
Intron Amino Acid Position:
380

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.4
0.53
1.1
67.2
39.2
Major BPS
71
0.52
1.1
77.7
35.3
Major PPT
76.8
0.6
1
73.5
36.3
Minor 5ss
40.2
-1.1
3.4
49.9
46.8
Minor BPS
65
0.55
1.7
82.08
39

Associated Gene:

Gene:
ANO6
Ensembl Gene ID:
ENSAPLG00000010899
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030155
31521311 - 31568103
46793
ENSAPLT00000018682
31521311 - 31563381
42071
ENSAPLT00000011390
31530177 - 31569879
39703
ENSAPLT00000034930
31530177 - 31569879
39703