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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_31553103_31553668_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
31553103 - 31553668
Intron Length:
566

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGAATA
5'SS Class:
strong_major
3'SS Sequence:
TCCAAAACTTTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
CTCTCCAAAACT
Flanking Amino Acid:
YWLGKYRNEECDPGGCLLEL
Intron Amino Acid Position:
512

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
94.1
1.04
0.7
89.9
22.1
Major BPS
100
1.24
0.5
100
0
Major PPT
61
0.25
0.9
56.2
38.6
Minor 5ss
37.1
-1.5
3
48.8
46.9
Minor BPS
56.1
0.27
2
76.47
46

Associated Gene:

Gene:
ANO6
Ensembl Gene ID:
ENSAPLG00000010899
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034930
31530177 - 31569879
39703
ENSAPLT00000030155
31521311 - 31568103
46793
ENSAPLT00000018682
31521311 - 31563381
42071
ENSAPLT00000011390
31530177 - 31569879
39703