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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_31553767_31555139_F

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
31553767 - 31555139
Intron Length:
1373

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCC|GTAAGTTCA
5'SS Class:
major
3'SS Sequence:
CTCTGACTGACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAC
U12 Branch Point Sequence:
TTCCCTCTGACT
Flanking Amino Acid:
IWNNIQEVLLPWVKNLIGRY
Intron Amino Acid Position:
544

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.3
0.48
1.3
68.9
38.6
Major BPS
77.8
0.69
0.9
69.4
37.3
Major PPT
66.6
0.37
1
61
39.3
Minor 5ss
42.3
-0.8
2.7
55.2
42.1
Minor BPS
58.1
0.33
1.7
77.43
39.1

Associated Gene:

Gene:
ANO6
Ensembl Gene ID:
ENSAPLG00000010899
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030155
31521311 - 31568103
46793
ENSAPLT00000018682
31521311 - 31563381
42071
ENSAPLT00000011390
31530177 - 31569879
39703
ENSAPLT00000034930
31530177 - 31569879
39703