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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_31555271_31556064_F

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
31555271 - 31556064
Intron Length:
794

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGTATT
5'SS Class:
strong_major
3'SS Sequence:
CTCCCTTTGGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTAAAT
U12 Branch Point Sequence:
TGTTTGTGACCT
Flanking Amino Acid:
LGLFYEYLEMVIQFGFVTLF
Intron Amino Acid Position:
588

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.3
0.95
0.9
90.9
28.7
Major BPS
67.2
0.43
1.2
73.3
39.1
Major PPT
74.7
0.56
0.9
71.7
32.7
Minor 5ss
41.2
-1
2.9
52.2
44.4
Minor BPS
46.9
-0.1
2.3
72.98
43.9

Associated Gene:

Gene:
ANO6
Ensembl Gene ID:
ENSAPLG00000010899
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018682
31521311 - 31563381
42071
ENSAPLT00000011390
31530177 - 31569879
39703
ENSAPLT00000034930
31530177 - 31569879
39703
ENSAPLT00000030155
31521311 - 31568103
46793