About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_31556271_31561028_F

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
31556271 - 31561028
Intron Length:
4758

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAC|GTAAGTACT
5'SS Class:
strong_major
3'SS Sequence:
TTCTGAAATGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGAA
U12 Branch Point Sequence:
TCTTTCTGAAAT
Flanking Amino Acid:
GIAILAVVTNAMIIAFTSDM
Intron Amino Acid Position:
657

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.3
0.74
1.2
84.4
33.5
Major BPS
82.1
0.8
0.8
71.6
36.4
Major PPT
70.1
0.45
1
63.6
41
Minor 5ss
39.8
-1.1
2.8
52.2
37.4
Minor BPS
66.8
0.6
1.5
81.8
39.4

Associated Gene:

Gene:
ANO6
Ensembl Gene ID:
ENSAPLG00000010899
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034930
31530177 - 31569879
39703
ENSAPLT00000030155
31521311 - 31568103
46793
ENSAPLT00000018682
31521311 - 31563381
42071
ENSAPLT00000011390
31530177 - 31569879
39703