About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_31654608_31709602_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
31654608 - 31709602
Intron Length:
54995

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCG|GTGAGTGCT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTATTCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
ATTTTTTTATTT
Flanking Amino Acid:
AAFALKQYYLRYLEKYEKVH
Intron Amino Acid Position:
95

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.9
0.78
0.9
75.3
34.6
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
92.5
0.96
0.7
85.7
33.4
Minor 5ss
30.4
-2.2
3.2
42.4
44.3
Minor BPS
66
0.58
1.5
81.3
34.9

Associated Gene:

Gene:
ARID2
Ensembl Gene ID:
ENSAPLG00000010567
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011043
31652986 - 31753795
100810