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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_31709737_31710550_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
31709737 - 31710550
Intron Length:
814

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAATTTT
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTTATTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
TTTTTCTTATTT
Flanking Amino Acid:
SYNYQQHSVSDYLRQSYGLS
Intron Amino Acid Position:
140

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.7
0.94
0.8
90.3
22.3
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
85.4
0.8
0.7
85.8
27.5
Minor 5ss
45.5
-0.5
3
66.9
44.4
Minor BPS
75.8
0.89
1.5
91.23
32.5

Associated Gene:

Gene:
ARID2
Ensembl Gene ID:
ENSAPLG00000010567
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011043
31652986 - 31753795
100810