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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_31722033_31723151_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
31722033 - 31723151
Intron Length:
1119

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAATGTGC
5'SS Class:
major
3'SS Sequence:
CTTTTCCTATCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAGTCAT
U12 Branch Point Sequence:
CTTTTCCTATCA
Flanking Amino Acid:
LDTLGNIAAELLLDPVDFKT
Intron Amino Acid Position:
342

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.5
0.67
1
66.7
39.8
Major BPS
77
0.67
1.1
77.7
37.1
Major PPT
82.7
0.74
0.8
82.3
28.1
Minor 5ss
37.1
-1.5
3.3
50.7
45.8
Minor BPS
54.6
0.14
2
71.36
41

Associated Gene:

Gene:
ARID2
Ensembl Gene ID:
ENSAPLG00000010567
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011043
31652986 - 31753795
100810