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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_31725163_31728223_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
31725163 - 31728223
Intron Length:
3061

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAAGTGCA
5'SS Class:
strong_major
3'SS Sequence:
TTTTCATCTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
ATTTTTTCATCT
Flanking Amino Acid:
EIDSEKFACQWLNAHFEVYL
Intron Amino Acid Position:
525

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.7
0.89
0.9
76.8
31.8
Major BPS
100
1.24
0.5
100
0
Major PPT
88.2
0.86
0.7
86
27.2
Minor 5ss
33.1
-1.9
3.1
38.4
40.8
Minor BPS
56.6
0.29
1.8
77.97
38.7

Associated Gene:

Gene:
ARID2
Ensembl Gene ID:
ENSAPLG00000010567
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011043
31652986 - 31753795
100810