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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_31732252_31742372_F

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
31732252 - 31742372
Intron Length:
10121

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGTTGC
5'SS Class:
strong_major
3'SS Sequence:
ACCCTTTCTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAC
U12 Branch Point Sequence:
TGTGTTTTAACC
Flanking Amino Acid:
TTYIQSMVTQSTPATSIPTV
Intron Amino Acid Position:
1584

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.9
0.87
0.9
74.9
36.3
Major BPS
89.7
0.98
0.7
89.9
20
Major PPT
78.5
0.64
0.8
72.7
31.3
Minor 5ss
46.6
-0.3
2.5
61.6
43.3
Minor BPS
69.3
0.59
1.3
74.15
36.9

Associated Gene:

Gene:
ARID2
Ensembl Gene ID:
ENSAPLG00000010567
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011043
31652986 - 31753795
100810