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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_31742522_31747599_F

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
31742522 - 31747599
Intron Length:
5078

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAATGAC
5'SS Class:
major
3'SS Sequence:
CGTCTTTTTGTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTAAAT
U12 Branch Point Sequence:
AAAACTTTAAAT
Flanking Amino Acid:
NFMCLWQSCKKWFQTPSQVF
Intron Amino Acid Position:
1633

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.2
0.62
1
71.9
31.5
Major BPS
82.3
0.8
0.9
87.6
25.7
Major PPT
81
0.7
0.8
76.5
32.1
Minor 5ss
34
-1.8
3.3
43.1
38.7
Minor BPS
61.2
0.43
1.4
71.06
39

Associated Gene:

Gene:
ARID2
Ensembl Gene ID:
ENSAPLG00000010567
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011043
31652986 - 31753795
100810