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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_31747739_31747828_F

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
31747739 - 31747828
Intron Length:
90

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGCAGATT
5'SS Class:
major
3'SS Sequence:
TTTCCCCAAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAC
U12 Branch Point Sequence:
TTTTCCCCAAAC
Flanking Amino Acid:
QRFSFITHLQDKHCSRDALL
Intron Amino Acid Position:
1680

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.2
0.48
1
72.1
39
Major BPS
81.3
0.78
0.8
83.4
26.1
Major PPT
71.3
0.48
0.9
67
33
Minor 5ss
31
-2.2
3.6
47.9
47.8
Minor BPS
58.3
0.24
2
77.36
37.8

Associated Gene:

Gene:
ARID2
Ensembl Gene ID:
ENSAPLG00000010567
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011043
31652986 - 31753795
100810