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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_31751007_31753322_F

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
31751007 - 31753322
Intron Length:
2316

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGCATC
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTTTTCTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTGAT
U12 Branch Point Sequence:
ATACTGATGATT
Flanking Amino Acid:
NIGKYSECGRRLLKRHENHL
Intron Amino Acid Position:
1780

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.7
0.98
0.8
85.3
32.2
Major BPS
83.5
0.83
0.8
71.6
36.4
Major PPT
90.8
0.92
0.6
85.1
29.7
Minor 5ss
43.9
-0.7
2.9
60.2
44.5
Minor BPS
41.9
-0.5
2.1
59.83
37.5

Associated Gene:

Gene:
ARID2
Ensembl Gene ID:
ENSAPLG00000010567
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011043
31652986 - 31753795
100810