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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_31764734_31765085_R

Intron Information:

Intron Rank:
14
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
31764734 - 31765085
Intron Length:
352

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGTTGA
5'SS Class:
strong_major
3'SS Sequence:
AAAACTGTTGTAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
ATTTCAA
U12 Branch Point Sequence:
TTTTCTTTAAAA
Flanking Amino Acid:
KEIVRKAVDKVCHSKSGEVN
Intron Amino Acid Position:
1354

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.3
0.83
0.9
77.8
33.2
Major BPS
82
0.79
0.8
83.7
25.7
Major PPT
59.1
0.21
1
51.4
42.6
Minor 5ss
41.3
-1
2.8
49.5
41.2
Minor BPS
82.7
1.02
1.1
88.66
27.6

Associated Gene:

Gene:
SCAF11
Ensembl Gene ID:
ENSAPLG00000010483
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030720
31763980 - 31794483
30504
ENSAPLT00000010922
31764605 - 31808029
43425